Publications

Jaffe DB, Shahi P, Adams BA, Chrisman AM, Finnegan PM, Raman N, Royall AE, Tsai F, Vollbrecht T, Reyes DS, McDonnell WJ (2022). Functional antibodies exhibit light chain coherence. https://www.nature.com/articles/s41586-022-05371-z.

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Jaffe DB, Shahi P, Adams BA, Chrisman AM, Finnegan PM, Raman N, Royall AE, Tsai F, Vollbrecht T, Reyes DS, McDonnell WJ (2022). enclone: precision clonotyping and analysis of immune receptors. https://www.biorxiv.org/content/10.1101/2022.04.21.489084v1.full.pdf.

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Setliff I, Shiakolas AR, Pilewski KA, Murji AA, Mapengo RE, Janowska K, Richardson S, Oosthuysen C, Raju N, Ronsard L, Kanekiyo M, Qin JS, Kramer KJ, Greenplate AR, McDonnell WJ, Graham BS, Connors M, Lingwood D, Acharya P, Morris L, Georgiev IS (2019). High-Throughput Mapping of B Cell Receptor Sequences to Antigen Specificity. https://www.cell.com/cell/pdf/S0092-8674(19)31224-3.pdf.

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Johnson DB, McDonnell WJ, Gonzalez-Ericsson PI, Al-Rohil RN, Mobley BC, Salem J, Wang DY, Sanchez V, Wang Y, Chastain CA, Barker K, Liang Y, Warren S, Beechem JM, Menzies AM, Tio M, Long GV, Cohen JV, Guidon AC, O’Hare M, Chandra S, Chowdhary A, Lebrun-Vignes B, Goldinger SM, Rushing EJ, Buchbinder EI, Mallal SA, Shi C, Xu Y, Moslehi JJ, Sanders ME, Sosman JA, Balko JM (2019). A case report of clonal EBV-like memory CD4+ T cell activation in fatal checkpoint inhibitor-induced encephalitis. https://www.nature.com/articles/s41591-019-0523-2.

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Newman JH, Shaver A, Sheehan JH, Mallal SA, Stone JH, Pillai S, Bastarache L, Riebau D, Allard‐Chamard H, Stone WM, Perugino C, Pilkinton MA, Smith SA, McDonnell WJ, Capra JA, Meiler J, Cogan J, Xing K, Mahajan VS, Mattoo H, Hamid R, Phillips JA, Undiagnosed Disease Network (2019). IgG4‐related disease: Association with a rare gene variant expressed in cytotoxic T cells. https://onlinelibrary.wiley.com/doi/full/10.1002/mgg3.686.

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Wanjalla CN, McDonnell WJ, Barnett L, Simmons JD, Furch BD, Lima MC, Woodward BO, Fan R, Ye F, Ram R, Baker PG, Pilkinton MA, Mashayekhi M, Brown NJ, Mallal SA, Kalams SA, Koethe JR (2019). Adipose Tissue in Persons With HIV Is Enriched for CD4+ T Effector Memory and T Effector Memory RA+ Cells, Which Show Higher CD69 Expression and CD57, CX3CR1, GPR56 Co-expression With Increasing Glucose Intolerance. https://www.frontiersin.org/articles/10.3389/fimmu.2019.00408/full.

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McDonnell WJ, Koethe JR, Mallal SA, Pilkinton MA, Kirabo A, Ameka MK, Cottam MA, Hasty AH, Kennedy AJ (2018). High CD8 T-cell receptor clonality and altered CDR3 properties are associated with elevated isolevuglandins in adipose tissue during diet-induced obesity. https://diabetes.diabetesjournals.org/content/67/11/2361.

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Setliff I, McDonnell WJ, Raju N, Bombardi RG, Murji AA, Scheepers C, Ziki R, Mynhardt C, Shepherd BE, Mamchak AA, Garrett N, Karim SA, Mallal SA, Crowe JE, Morris L, Georgiev IS (2018). Multi-donor longitudinal antibody repertoire sequencing reveals the existence of public antibody clonotypes in HIV-1 infection. https://www.sciencedirect.com/science/article/pii/S1931312818302282.

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Lucas M, Deshpande P, James I, Rauch A, Pfafferott K, Gaylard E, Merani S, Plauzolles A, Lucas A, McDonnell WJ, Kalams SA, Pilkinton MA, Chastain C, Barnett B, Prosser A, Mallal SA, Fitzmaurice K, Drummer H, Ansari MA, Pedergnana V, Barnes E, John M, Kelleher D, Klenerman P, Gaudieri S (2018). Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome. https://www.nature.com/articles/s41598-018-25559-6.

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Koethe JR, McDonnell WJ, Kennedy A, Abana CO, Pilkinton MA, Setliff I, Georgiev IS, Barnett L, Hager CC, Smith R, Kalams SA, Hasty A, Mallal SA (2018). Adipose Tissue is Enriched for Activated and Late-Differentiated CD8+ T Cells and Shows Distinct CD8+ Receptor Usage, Compared With Blood in HIV-Infected Persons. https://www.ncbi.nlm.nih.gov/pubmed/29040163.

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Abana CO, Pilkinton MA, Gaudieri S, Chopra A, McDonnell WJ, Wanjalla CN, Barnett L, Gangula R, Hager C, Jung DK, Engelhardt BG, Jagasia MH, Klenerman P, Phillips EJ, Koelle DM, Kalams SA, Mallal SA (2017). Cytomegalovirus (CMV) Epitope-Specific CD4+ T Cells Are Inflated in HIV+ CMV+ Subjects. https://www.jimmunol.org/content/early/2017/09/29/jimmunol.1700851.

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